"From The Inside" was not listed on the physical setlist, at least copies that we have (a printed copy and the photo of the stage setlist in the DSP), but still performed after "No More Sorrow". It could have been a very last second addition after the printed setlists were already made, before the band took the stage.
The band added "Breaking The Habit" to the setlist for this show. It was not a part of B-13 at the time, but they inserted it between "Numb" and "Iridescent". The song's sampled intro was messed up, but the band rolled with it and also didn't fix the mistake on the DSP.
Mike let the crowd sing part of the second verse of "In The End". This messed Chester up, causing him to sing "it's so unreal" when he was supposed to sing "got so far".
During the bridge of "Bleed It Out" Mike rapped verse 1 of "A Place For My Head" followed by Chester singing the bridge. To introduce it, Mike said, "Let me ask you guys a question - do we have Hybrid Theory fans in the house? This is an extra special night, you guys are gonna be on fuckin' TV so we need to hear you sing this shit with us!"
"Crawling" and "New Divide" swapped spots in the encore starting at this show, and this continued for the rest of the tour.